PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35384.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 619aa    MW: 68275 Da    PI: 6.4086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35384.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13437483455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  KHN35384.1 437 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 483
                 799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5349235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.59E-19431496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-15432487No hitNo description
PROSITE profilePS5088817.453433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11437483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18437496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-17439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKLDAGVVWD DEDKAMLGAV LGGRALEFLM ANWLSNESVL MAVGSEEGLQ NKLSDLVERP  60
NVSNFSWNYS IFWQLSHSKS GDWVLGWGDG CCREPSEEEE GSLGRGTLRL LRVDEEMQQR  120
MRKRVLQKLH TTFGGEDEDN YAFGLDHVTD TEMFFLASMY FSFPRGHGGP GKCFASGKHL  180
WLKSVSDYCV RSSLASSAGI QTIVLVPTDM GVVELGSVRM LPESFELLQA VKSVFSTQSP  240
SYQGVSVSTG GNAVFPGLAI GDANKVDGGV SIPKVFVNTI GNRTHFREKL AVRKMEDNRP  300
WPGHGHPDPN GNNLHNNVSF PNVRGNSLHV SSWAVNSDLR QPGPLEIFAP RAPTSSVLAE  360
LANVGKQDFR PQRQVQMQID FTGATSRPSS ARPVVGELEL SDVEASCREE QQPSFADERK  420
PRKRGRKPAN GREAPLNHVE AERQRREKLN QRFYALRSVV PNISKMDKAS LLGDAIAYIN  480
ELQAKVRIME AEKERFGSTS NDGSVLEAKL RLENQEKKAP DVDIQAFQDE VIVKVSCPLD  540
SHPVSKVIQT FNEAQISVVE SKLAAANDTI FHTFVIKSQG PEQLTKDKLI AVFSPTESNS  600
LQPLSQLDSK GIAVSIVHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23452365193Transcription factor MYC3
4rqw_B3e-23452365193Transcription factor MYC3
4rs9_A3e-23452365193Transcription factor MYC3
4yz6_A3e-23452365193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418426RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553791.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0B2RT160.0A0A0B2RT16_GLYSO; Transcription factor bHLH13
TrEMBLK7N0C20.0K7N0C2_SOYBN; Uncharacterized protein
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-179bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]